RaptorX - Complex Contact: a protein complex contact map prediction server

Protein Complex Contact Prediction

RaptorX-ComplexContact is a web server that predicts the interfacial contacts between two potentially interacting protein sequences (heterodimer only) using co-evolution and deep learning techniques. It applies an ultra-deep learning model trained from single-chain proteins to predict contacts for a pair of proteins. Our deep learning method greatly outperforms the latest co-evolution methods by learning contact occurrence patterns from solved protein structures. Our intra-chain contact prediction method RaptorX-Contact was ranked 1st in contact prediction in the worldwide protein structure prediction (CASP) competition round XII. See here for a ranking list published by the CASP12 official assessors.

Job Identification (result example)

Jobname: Email:
check here if the input is a single Multiple Sequence Alignment (notes and format)

First Sequence(example)

First Sequence file:

Second Sequence(example)

Second Sequence file:

Current server load

11503 jobs pending
0 jobs done in the last 24 hours
0 jobs done in the last 30 days

#server users: 93067
#processed jobs: 699540

Job policy

To maximize the utility of the server to the community at large the following limits on job submission for each user are enforced.

Please submit up to 20 protein sequences (in the FASTA format) in a batch for prediction. If your email box cannot receive a large attachment file, please submit a SMALL number of sequences in a batch. Otherwise the result package may be too big to be received.
Please SAVE the assigned JobID for retrieval of job results, especially when an email address is not provided in submission.
Each user can have no more than 500 sequences pending prediction at any time.
Should you have a special project that requires more resources, please contact us to inquire further.