Protein Structure Prediction
RaptorX is a new protein structure prediction program developed by Xu group, excelling at the alignment of distantly-related proteins with sparse sequence profile and that of a single target to multiple templates. In particular, RaptorX can generate much better alignments than our previous single-template threading program RAPTOR. Currently, RaptorX consists of four major modules: single-template threading, alignment quality assessment, multiple-template threading and fragment-free approach to free modeling. Due to limited computational power, this server offers the first three modules for regular usage (More details).
To predict structures for your sequences, please click here or New Job at the top menu.
News and updates
Because sometimes we have to use the RaptorX machine to run some CASP10 targets, it may take a longer time than before for the RaptorX server to finish processing one job.
Due to limited computational power, RaptorX will not process CASP10 sequences which are not submitted from the CASP10 meta server.
If you submit the same sequence more than once, now you can delete the repeated submissions by yourself before the sequence is processed (i.e., the job status is still pending). This greatly helps reduce the load of the RaptorX server. You can do so by first log in your account with your email address and then click on the "Delete job" link. Reminder: By clicking on the "My Jobs" link at the right top corner of the web page at http://raptorx.uchicago.edu/, you can log in your account with your email address.
